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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK29550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MYB_related | ||||||||
Protein Properties | Length: 353aa MW: 38137.4 Da PI: 6.2378 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.3 | 3.4e-13 | 108 | 152 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++lG+g+W+ Iar Rt+ q+ s+ qky PK29550.1 108 PWTEEEHRLFLIGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKY 152 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.757 | 101 | 157 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.98E-17 | 103 | 158 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.1E-19 | 104 | 156 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 5.5E-10 | 105 | 155 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-11 | 105 | 151 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.6E-11 | 108 | 152 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.71E-9 | 108 | 153 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MTRRCSHCSN NGHNSRTCPS RGGGAGGAGG GLKLFGVRLT DGSIIKKSAS MGNLSAHYHS 60 SSSAAGSPNP ESPSSDPHND ERDGYLSDDP THASCSTNRR ADRKKGVPWT EEEHRLFLIG 120 LQKLGKGDWR GIARNYVVSR TPTQVASHAQ KYFIRQNNAT RRKRRSSLFD MVPDMVSDPP 180 PVPEEDLLPS FQETEHENAK SLPSLNLSLQ SECEPMEATD DTKVEEDNEP IVGSNGFPPM 240 IPGLSGYFPA YMPVPFSLWP PGAAPLEEES IAETTQHQVL KPIPIVAKEP VNVDELVGMS 300 QLSLGEAERG HREPSPLSLK LLGEPSRQSA FHSNAPASGS DLSEGKSTPI QAV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010098140.1 | 0.0 | Transcription factor | ||||
TrEMBL | W9R6M0 | 0.0 | W9R6M0_9R | ||||
STRING | GLYMA13G43120.1 | 1e-164 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7719 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16350.1 | 1e-103 | MYB_related family protein |