PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK29550.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB_related
Protein Properties Length: 353aa    MW: 38137.4 Da    PI: 6.2378
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK29550.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.33.4e-13108152347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + ++lG+g+W+ Iar     Rt+ q+ s+ qky
        PK29550.1 108 PWTEEEHRLFLIGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKY 152
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.757101157IPR017930Myb domain
SuperFamilySSF466895.98E-17103158IPR009057Homeodomain-like
TIGRFAMsTIGR015578.1E-19104156IPR006447Myb domain, plants
SMARTSM007175.5E-10105155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-11105151IPR009057Homeodomain-like
PfamPF002498.6E-11108152IPR001005SANT/Myb domain
CDDcd001673.71E-9108153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNSRTCPS RGGGAGGAGG GLKLFGVRLT DGSIIKKSAS MGNLSAHYHS  60
SSSAAGSPNP ESPSSDPHND ERDGYLSDDP THASCSTNRR ADRKKGVPWT EEEHRLFLIG  120
LQKLGKGDWR GIARNYVVSR TPTQVASHAQ KYFIRQNNAT RRKRRSSLFD MVPDMVSDPP  180
PVPEEDLLPS FQETEHENAK SLPSLNLSLQ SECEPMEATD DTKVEEDNEP IVGSNGFPPM  240
IPGLSGYFPA YMPVPFSLWP PGAAPLEEES IAETTQHQVL KPIPIVAKEP VNVDELVGMS  300
QLSLGEAERG HREPSPLSLK LLGEPSRQSA FHSNAPASGS DLSEGKSTPI QAV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010098140.10.0Transcription factor
TrEMBLW9R6M00.0W9R6M0_9R
STRINGGLYMA13G43120.11e-164(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77193346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.11e-103MYB_related family protein